# GitHub repos by broadinstitute

<https://repo.masters-masters.com/en/owners/broadinstitute>

[Home](https://repo.masters-masters.com/en) › [broadinstitute](https://repo.masters-masters.com/en/owners/broadinstitute)

All 29 public GitHub repos by broadinstitute in RepoMasters, most starred first: stars, language, tier and card for each.

## GitHub repos by broadinstitute

29 public repos by broadinstitute in the catalog, most starred first.

- [broadinstitute/gatk · ★ 2,010 · Java · RC](https://repo.masters-masters.com/en/repos/broadinstitute/gatk)
- [broadinstitute/cromwell · ★ 1,083 · Scala · Beta](https://repo.masters-masters.com/en/repos/broadinstitute/cromwell)
- [broadinstitute/picard · ★ 1,082 · Java · Beta](https://repo.masters-masters.com/en/repos/broadinstitute/picard)
- [broadinstitute/infercnv · ★ 686 · R · Alpha](https://repo.masters-masters.com/en/repos/broadinstitute/infercnv)
- [broadinstitute/keras-rcnn · ★ 553 · Python · Alpha](https://repo.masters-masters.com/en/repos/broadinstitute/keras-rcnn)
- [broadinstitute/CellBender · ★ 428 · Python · Alpha](https://repo.masters-masters.com/en/repos/broadinstitute/CellBender)
- [broadinstitute/gtex-pipeline · ★ 414 · Python · Alpha](https://repo.masters-masters.com/en/repos/broadinstitute/gtex-pipeline)
- [broadinstitute/pilon · ★ 391 · Scala · Alpha](https://repo.masters-masters.com/en/repos/broadinstitute/pilon)
- [broadinstitute/Tangram · ★ 375 · Jupyter Notebook · Alpha](https://repo.masters-masters.com/en/repos/broadinstitute/Tangram)
- [broadinstitute/ssGSEA2.0 · ★ 345 · R · Alpha](https://repo.masters-masters.com/en/repos/broadinstitute/ssGSEA2.0)
- [broadinstitute/keras-resnet · ★ 302 · Python · Alpha](https://repo.masters-masters.com/en/repos/broadinstitute/keras-resnet)
- [broadinstitute/ABC-Enhancer-Gene-Prediction · ★ 272 · Python · Alpha](https://repo.masters-masters.com/en/repos/broadinstitute/ABC-Enhancer-Gene-Prediction)
- [broadinstitute/warp · ★ 232 · Jupyter Notebook · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/warp)
- [broadinstitute/ichorCNA · ★ 222 · R · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/ichorCNA)
- [broadinstitute/tensorqtl · ★ 221 · Python · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/tensorqtl)
- [broadinstitute/seqr · ★ 220 · Python · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/seqr)
- [broadinstitute/gatk-sv · ★ 210 · Python · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/gatk-sv)
- [broadinstitute/viral-ngs · ★ 198 · Python · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/viral-ngs)
- [broadinstitute/ml4h · ★ 182 · Python · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/ml4h)
- [broadinstitute/wot · ★ 166 · Jupyter Notebook · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/wot)
- [broadinstitute/long-read-pipelines · ★ 152 · Jupyter Notebook · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/long-read-pipelines)
- [broadinstitute/cellpainting-gallery · ★ 142 · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/cellpainting-gallery)
- [broadinstitute/Drop-seq · ★ 137 · Jupyter Notebook · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/Drop-seq)
- [broadinstitute/depmap\_omics · ★ 128 · HTML · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/depmap_omics)
- [broadinstitute/mutect · ★ 105 · Java · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/mutect)
- [broadinstitute/catch · ★ 105 · Python · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/catch)
- [broadinstitute/xtermcolor · ★ 104 · Python · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/xtermcolor)
- [broadinstitute/genomics-in-the-cloud · ★ 103 · Jupyter Notebook · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/genomics-in-the-cloud)
- [broadinstitute/gnomad\_methods · ★ 102 · Python · Prototype](https://repo.masters-masters.com/en/repos/broadinstitute/gnomad_methods)

## See broadinstitute on GitHub

- [https://github.com/broadinstitute](https://github.com/broadinstitute)

---
Data: GitHub