# jfnavarro/st\_pipeline

<https://repo.masters-masters.com/en/repos/jfnavarro/st_pipeline>

[Home](https://repo.masters-masters.com/en) › [jfnavarro](https://repo.masters-masters.com/en/owners/jfnavarro) › [st\_pipeline](https://repo.masters-masters.com/en/repos/jfnavarro/st_pipeline)

jfnavarro/st\_pipeline has 105 stars on GitHub. Its RepoMasters card: Prototype tier. ST Pipeline contains the tools and scripts needed to process and analyze…

| Field | Value |
| --- | --- |
| Owner | [jfnavarro](https://repo.masters-masters.com/en/owners/jfnavarro) |
| Stars | 105 |
| Forks | 54 |
| Language | [Python](https://repo.masters-masters.com/en/languages/python) |
| License | None |
| Created | 2016 |
| Topics | pipeline, spatial-transcriptomics, visium, scrna-seq |
| Tier | [Prototype (100 to 249 ★)](https://repo.masters-masters.com/en/ranks/rush) |
| View on GitHub | [jfnavarro/st\_pipeline](https://github.com/jfnavarro/st_pipeline) |

## Repository

ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

The tier for repos with 100 to 249 ★. Published odds per card pulled: 70%. Rarity: Common.

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Data: GitHub · Illustration drawn by RepoMasters from the repo’s ID and its language color.