# nf-core/viralrecon

<https://repo.masters-masters.com/en/repos/nf-core/viralrecon>

[Home](https://repo.masters-masters.com/en) › [nf-core](https://repo.masters-masters.com/en/owners/nf-core) › [viralrecon](https://repo.masters-masters.com/en/repos/nf-core/viralrecon)

nf-core/viralrecon has 167 stars on GitHub. Its RepoMasters card: Prototype tier. Assembly and intrahost/low-frequency variant calling for viral samples

| Field | Value |
| --- | --- |
| Owner | [nf-core](https://repo.masters-masters.com/en/owners/nf-core) |
| Stars | 167 |
| Forks | 159 |
| Language | [Nextflow](https://repo.masters-masters.com/en/languages/nextflow) |
| License | MIT |
| Created | 2020 |
| Topics | viral, metagenomics, amplicon, assembly, variant-calling, illumina, pipeline, workflow, nextflow, nf-core |
| Tier | [Prototype (100 to 249 ★)](https://repo.masters-masters.com/en/ranks/rush) |
| View on GitHub | [nf-core/viralrecon](https://github.com/nf-core/viralrecon) |

## Repository

Assembly and intrahost/low-frequency variant calling for viral samples

The tier for repos with 100 to 249 ★. Published odds per card pulled: 70%. Rarity: Common.

## More repos by nf-core

- [nf-core/rnaseq · ★ 1,403 · Nextflow · Beta](https://repo.masters-masters.com/en/repos/nf-core/rnaseq)
- [nf-core/sarek · ★ 616 · Nextflow · Alpha](https://repo.masters-masters.com/en/repos/nf-core/sarek)
- [nf-core/modules · ★ 436 · Nextflow · Alpha](https://repo.masters-masters.com/en/repos/nf-core/modules)
- [nf-core/scrnaseq · ★ 364 · Nextflow · Alpha](https://repo.masters-masters.com/en/repos/nf-core/scrnaseq)
- [nf-core/tools · ★ 330 · Python · Alpha](https://repo.masters-masters.com/en/repos/nf-core/tools)
- [nf-core/mag · ★ 326 · Nextflow · Alpha](https://repo.masters-masters.com/en/repos/nf-core/mag)

## Nearby in Nextflow

- [epi2me-labs/wf-human-variation · ★ 181 · Nextflow · Prototype](https://repo.masters-masters.com/en/repos/epi2me-labs/wf-human-variation)
- [PGScatalog/pgsc\_calc · ★ 179 · Nextflow · Prototype](https://repo.masters-masters.com/en/repos/PGScatalog/pgsc_calc)
- [nf-core/rnafusion · ★ 176 · Nextflow · Prototype](https://repo.masters-masters.com/en/repos/nf-core/rnafusion)
- [labsyspharm/mcmicro · ★ 156 · Nextflow · Prototype](https://repo.masters-masters.com/en/repos/labsyspharm/mcmicro)
- [CRG-CNAG/CalliNGS-NF · ★ 137 · Nextflow · Prototype](https://repo.masters-masters.com/en/repos/CRG-CNAG/CalliNGS-NF)
- [MaestSi/MetONTIIME · ★ 129 · Nextflow · Prototype](https://repo.masters-masters.com/en/repos/MaestSi/MetONTIIME)

---
Data: GitHub · Illustration drawn by RepoMasters from the repo’s ID and its language color.