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pirovc/genome_updater

genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity checks, NCBI taxonomy and GTDB integration and support for parallel downloads.

Owner
pirovc (personal account)
Stars
Stars: 176
Forks
Forks: 19
Language
Shell
License
MIT
Created
2017
Topics
bioinformaticsncbibashgenomesequencerefseqgenbankdownloaddatabasegenomes
Tier
Prototype (100 to 249 ★) What this tier means
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